Cardano Updates

The expression
> peerSelectionStateToCounters Cardano.PublicRootPeers.toSet
>   Cardano.cardanoPeerSelectionStatetoCounters st

doesn't typecheck because of universally quantified type variables
in the instance head. The next commit introduces a type class and
a follow-up commit will add a constraint to show that we can
provide all the extra peer information in this LogFormatting instance.

Alternatively, the instance could be monomorphic, but that would
lead to duplicated code for the base peer selection counters instance,
and the extra/custom one in another module, and the choice would be
up to the user which one to import. In comparison, the proposed
approach is modular, where the instance with the counters extension
only provides those additional counters to the base instance, and the
user imports both into the program.

This feature was used for deprecated counters

This will allow a user-defined custom namespace for these
traces in the tracing system. In particular, Cardano traces
for UseBootstrapPeersChanged and LedgerStateJudgement traces
to be injected into the peer selection trace without an
additional namespace wrapper (eg. "ExtraTrace") since by
default getExtraNamespace is [].

un-orphaned from orphan-instances into Bootstrap module

Bumps [minimatch](https://github.com/isaacs/minimatch) from 3.1.2 to 3.1.5.
- [Changelog](https://github.com/isaacs/minimatch/blob/main/changelog.md)
- [Commits](https://github.com/isaacs/minimatch/compare/v3.1.2...v3.1.5)

---
updated-dependencies:
- dependency-name: minimatch
  dependency-version: 3.1.5
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

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Generated by cargo-workspaces

Rename all modules, packages, config sections, and infrastructure from
internal codenames (mercury, pollux, castor, connect, agent.*) to
domain-first names (didcomm, credentials, did, connections, etc.)
following ADR 0001.

Changes include:
- Rename module directories from codenames to domain names
- Rename SBT project IDs, artifact names, and dependency objects
- Rename Scala packages throughout the codebase
- Rename agent.* packages (walletapi, server, notification, vdr)
- Move notification traits from core to API module
- Align event.notification package to notifications
- Rename config sections (pollux -> credentials, connect -> connections)
- Rename env vars (POLLUX_DB_* -> CREDENTIALS_DB_*, etc.)
- Rename SQL migration paths and Docker/Helm infrastructure
- Remove unused re-export package.scala files
- Remove stale codename build artifact directories
- Remove duplicate and dead code files
- Clean up import aliases and comments referencing old names
- Update .github/labeler.yml and CI workflow for new paths

Co-Authored-By: Claude Opus 4.6 <[email protected]>
Signed-off-by: Yurii Shynbuiev <[email protected]>